Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
In this research, we present a computational study of three peptides isolated from the skin secretions of the amphibians Cruziohyla calcarifer and Agalychnis spurelli. Experimentally, the amino acid sequence was elucidated in a previous study by molecular cloning and tandem mass spectrometry. Peptid...
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2021
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| _version_ | 1858435692962512896 |
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| author | Ramos Galarza, Jean Pierre |
| author_facet | Ramos Galarza, Jean Pierre |
| author_role | author |
| collection | Repositorio Universidad Regional Amazónica |
| dc.creator.none.fl_str_mv | Ramos Galarza, Jean Pierre |
| dc.date.none.fl_str_mv | 2021 2022-07-12T20:29:48Z 2022-07-12T20:29:48Z |
| dc.format.none.fl_str_mv | application/pdf |
| dc.identifier.none.fl_str_mv | http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573 |
| dc.language.none.fl_str_mv | es |
| dc.relation.none.fl_str_mv | TRABAJOS DE TITULACIÓN;TT-BT-IKIAM-000023 |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:Repositorio Universidad Regional Amazónica instname:Universidad Regional Amazónica instacron:IKIAM |
| dc.subject.none.fl_str_mv | Peptides Amphibiansl, Bioinformatics Antimicrobia Anticancer |
| dc.title.none.fl_str_mv | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| dc.type.none.fl_str_mv | info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/bachelorThesis |
| description | In this research, we present a computational study of three peptides isolated from the skin secretions of the amphibians Cruziohyla calcarifer and Agalychnis spurelli. Experimentally, the amino acid sequence was elucidated in a previous study by molecular cloning and tandem mass spectrometry. Peptides were coupled with key microbial and carcinogenic receptors by molecular docking. Additionally, molecular dynamics were performed to quantify the receptor-peptide interaction using MMGBSA and MMPBSA. Subsequently, the peptides were synthesized in solid phase and analyzed against the microorganisms E. coli, C. albicans, S. aureus and against three cell lines; A549, HFF and HEK 293T to determine the antimicrobial and anticancer properties. In addition, peptide toxicity was assessed by haemolytic test. Bioinformatic results indicated that AS1 was the most promising because it presented lower bond values in interactions. The MIC trials indicated that AS1 was the only one with antimicrobial activity against the three microorganisms evaluated at a concentration of 256 and 512 mg/L. Although anticancer assays all peptides showed significant p<0.001 to 500 μM activity against the three cell lines, AS1 presented the lowest values. Finally, in the toxicity evaluation the AS1 peptide was the only one that showed toxicity at 256 and 512 mg/L, indicating that it is necessary to look for alternatives to decrease the hemolytic activity. This preliminary study suggests that AS1 was identified as a candidate peptide using bioinformatics tools, allowing a reduction in time and costs. |
| eu_rights_str_mv | openAccess |
| format | bachelorThesis |
| id | IKIAM_40cafce594e024ce269e33dbc9f4636f |
| instacron_str | IKIAM |
| institution | IKIAM |
| instname_str | Universidad Regional Amazónica |
| language_invalid_str_mv | es |
| network_acronym_str | IKIAM |
| network_name_str | Repositorio Universidad Regional Amazónica |
| oai_identifier_str | oai:repositorio.ikiam.edu.ec:RD_IKIAM/573 |
| publishDate | 2021 |
| reponame_str | Repositorio Universidad Regional Amazónica |
| repository.mail.fl_str_mv | . |
| repository.name.fl_str_mv | Repositorio Universidad Regional Amazónica - Universidad Regional Amazónica |
| repository_id_str | 0 |
| spelling | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitroRamos Galarza, Jean PierrePeptidesAmphibiansl,BioinformaticsAntimicrobiaAnticancerIn this research, we present a computational study of three peptides isolated from the skin secretions of the amphibians Cruziohyla calcarifer and Agalychnis spurelli. Experimentally, the amino acid sequence was elucidated in a previous study by molecular cloning and tandem mass spectrometry. Peptides were coupled with key microbial and carcinogenic receptors by molecular docking. Additionally, molecular dynamics were performed to quantify the receptor-peptide interaction using MMGBSA and MMPBSA. Subsequently, the peptides were synthesized in solid phase and analyzed against the microorganisms E. coli, C. albicans, S. aureus and against three cell lines; A549, HFF and HEK 293T to determine the antimicrobial and anticancer properties. In addition, peptide toxicity was assessed by haemolytic test. Bioinformatic results indicated that AS1 was the most promising because it presented lower bond values in interactions. The MIC trials indicated that AS1 was the only one with antimicrobial activity against the three microorganisms evaluated at a concentration of 256 and 512 mg/L. Although anticancer assays all peptides showed significant p<0.001 to 500 μM activity against the three cell lines, AS1 presented the lowest values. Finally, in the toxicity evaluation the AS1 peptide was the only one that showed toxicity at 256 and 512 mg/L, indicating that it is necessary to look for alternatives to decrease the hemolytic activity. This preliminary study suggests that AS1 was identified as a candidate peptide using bioinformatics tools, allowing a reduction in time and costs.2022-07-12T20:29:48Z2022-07-12T20:29:48Z2021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/bachelorThesisapplication/pdfhttp://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573esTRABAJOS DE TITULACIÓN;TT-BT-IKIAM-000023info:eu-repo/semantics/openAccessreponame:Repositorio Universidad Regional Amazónicainstname:Universidad Regional Amazónicainstacron:IKIAM2022-07-13T08:00:29Zoai:repositorio.ikiam.edu.ec:RD_IKIAM/573Institucionalhttps://repositorio.ikiam.edu.ec/Universidad públicahttps://www.ikiam.edu.ec/https://repositorio.ikiam.edu.ec/oaiEcuador...opendoar:02022-07-13T08:00:29falseInstitucionalhttps://repositorio.ikiam.edu.ec/Universidad públicahttps://www.ikiam.edu.ec/https://repositorio.ikiam.edu.ec/oai.Ecuador...opendoar:02022-07-13T08:00:29Repositorio Universidad Regional Amazónica - Universidad Regional Amazónicafalse |
| spellingShingle | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro Ramos Galarza, Jean Pierre Peptides Amphibiansl, Bioinformatics Antimicrobia Anticancer |
| status_str | publishedVersion |
| title | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| title_full | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| title_fullStr | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| title_full_unstemmed | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| title_short | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| title_sort | Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro |
| topic | Peptides Amphibiansl, Bioinformatics Antimicrobia Anticancer |
| url | http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573 |