Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro

In this research, we present a computational study of three peptides isolated from the skin secretions of the amphibians Cruziohyla calcarifer and Agalychnis spurelli. Experimentally, the amino acid sequence was elucidated in a previous study by molecular cloning and tandem mass spectrometry. Peptid...

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1. Verfasser: Ramos Galarza, Jean Pierre (author)
Format: bachelorThesis
Veröffentlicht: 2021
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Online Zugang:http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573
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author Ramos Galarza, Jean Pierre
author_facet Ramos Galarza, Jean Pierre
author_role author
collection Repositorio Universidad Regional Amazónica
dc.creator.none.fl_str_mv Ramos Galarza, Jean Pierre
dc.date.none.fl_str_mv 2021
2022-07-12T20:29:48Z
2022-07-12T20:29:48Z
dc.format.none.fl_str_mv application/pdf
dc.identifier.none.fl_str_mv http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573
dc.language.none.fl_str_mv es
dc.relation.none.fl_str_mv TRABAJOS DE TITULACIÓN;TT-BT-IKIAM-000023
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
dc.source.none.fl_str_mv reponame:Repositorio Universidad Regional Amazónica
instname:Universidad Regional Amazónica
instacron:IKIAM
dc.subject.none.fl_str_mv Peptides
Amphibiansl,
Bioinformatics
Antimicrobia
Anticancer
dc.title.none.fl_str_mv Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
dc.type.none.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/bachelorThesis
description In this research, we present a computational study of three peptides isolated from the skin secretions of the amphibians Cruziohyla calcarifer and Agalychnis spurelli. Experimentally, the amino acid sequence was elucidated in a previous study by molecular cloning and tandem mass spectrometry. Peptides were coupled with key microbial and carcinogenic receptors by molecular docking. Additionally, molecular dynamics were performed to quantify the receptor-peptide interaction using MMGBSA and MMPBSA. Subsequently, the peptides were synthesized in solid phase and analyzed against the microorganisms E. coli, C. albicans, S. aureus and against three cell lines; A549, HFF and HEK 293T to determine the antimicrobial and anticancer properties. In addition, peptide toxicity was assessed by haemolytic test. Bioinformatic results indicated that AS1 was the most promising because it presented lower bond values in interactions. The MIC trials indicated that AS1 was the only one with antimicrobial activity against the three microorganisms evaluated at a concentration of 256 and 512 mg/L. Although anticancer assays all peptides showed significant p<0.001 to 500 μM activity against the three cell lines, AS1 presented the lowest values. Finally, in the toxicity evaluation the AS1 peptide was the only one that showed toxicity at 256 and 512 mg/L, indicating that it is necessary to look for alternatives to decrease the hemolytic activity. This preliminary study suggests that AS1 was identified as a candidate peptide using bioinformatics tools, allowing a reduction in time and costs.
eu_rights_str_mv openAccess
format bachelorThesis
id IKIAM_40cafce594e024ce269e33dbc9f4636f
instacron_str IKIAM
institution IKIAM
instname_str Universidad Regional Amazónica
language_invalid_str_mv es
network_acronym_str IKIAM
network_name_str Repositorio Universidad Regional Amazónica
oai_identifier_str oai:repositorio.ikiam.edu.ec:RD_IKIAM/573
publishDate 2021
reponame_str Repositorio Universidad Regional Amazónica
repository.mail.fl_str_mv .
repository.name.fl_str_mv Repositorio Universidad Regional Amazónica - Universidad Regional Amazónica
repository_id_str 0
spelling Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitroRamos Galarza, Jean PierrePeptidesAmphibiansl,BioinformaticsAntimicrobiaAnticancerIn this research, we present a computational study of three peptides isolated from the skin secretions of the amphibians Cruziohyla calcarifer and Agalychnis spurelli. Experimentally, the amino acid sequence was elucidated in a previous study by molecular cloning and tandem mass spectrometry. Peptides were coupled with key microbial and carcinogenic receptors by molecular docking. Additionally, molecular dynamics were performed to quantify the receptor-peptide interaction using MMGBSA and MMPBSA. Subsequently, the peptides were synthesized in solid phase and analyzed against the microorganisms E. coli, C. albicans, S. aureus and against three cell lines; A549, HFF and HEK 293T to determine the antimicrobial and anticancer properties. In addition, peptide toxicity was assessed by haemolytic test. Bioinformatic results indicated that AS1 was the most promising because it presented lower bond values in interactions. The MIC trials indicated that AS1 was the only one with antimicrobial activity against the three microorganisms evaluated at a concentration of 256 and 512 mg/L. Although anticancer assays all peptides showed significant p<0.001 to 500 μM activity against the three cell lines, AS1 presented the lowest values. Finally, in the toxicity evaluation the AS1 peptide was the only one that showed toxicity at 256 and 512 mg/L, indicating that it is necessary to look for alternatives to decrease the hemolytic activity. This preliminary study suggests that AS1 was identified as a candidate peptide using bioinformatics tools, allowing a reduction in time and costs.2022-07-12T20:29:48Z2022-07-12T20:29:48Z2021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/bachelorThesisapplication/pdfhttp://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573esTRABAJOS DE TITULACIÓN;TT-BT-IKIAM-000023info:eu-repo/semantics/openAccessreponame:Repositorio Universidad Regional Amazónicainstname:Universidad Regional Amazónicainstacron:IKIAM2022-07-13T08:00:29Zoai:repositorio.ikiam.edu.ec:RD_IKIAM/573Institucionalhttps://repositorio.ikiam.edu.ec/Universidad públicahttps://www.ikiam.edu.ec/https://repositorio.ikiam.edu.ec/oaiEcuador...opendoar:02022-07-13T08:00:29falseInstitucionalhttps://repositorio.ikiam.edu.ec/Universidad públicahttps://www.ikiam.edu.ec/https://repositorio.ikiam.edu.ec/oai.Ecuador...opendoar:02022-07-13T08:00:29Repositorio Universidad Regional Amazónica - Universidad Regional Amazónicafalse
spellingShingle Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
Ramos Galarza, Jean Pierre
Peptides
Amphibiansl,
Bioinformatics
Antimicrobia
Anticancer
status_str publishedVersion
title Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
title_full Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
title_fullStr Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
title_full_unstemmed Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
title_short Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
title_sort Evaluación de bioactividad de péptidos derivados de la piel de anfibios: enfoque in sílico e in vitro
topic Peptides
Amphibiansl,
Bioinformatics
Antimicrobia
Anticancer
url http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/573