Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana
Endophytic entomopathogenic species are known to systematically colonize host plants and form symbiotic associations that benefit the plants they live with. The actin-depolymerizing factors (ADFs) are a group of gene family that regulate growth, development, and defense-related functions in plants....
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| Natura: | article |
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2022
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| Accesso online: | https://doi.org/10.1016/j.ijbiomac.2022.11.153 http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/623 |
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| author | Ramos Aguila, Luis Carlos |
| author2 | Sánchez Moreano, Jessica Paola Senyo Akutse, Komivi Bamisile, Bamisope Steve Liu, Juxiu Haider, Fasih Ullah Ashraf, Hafiza Javaira Wang, Liande |
| author2_role | author author author author author author author |
| author_facet | Ramos Aguila, Luis Carlos Sánchez Moreano, Jessica Paola Senyo Akutse, Komivi Bamisile, Bamisope Steve Liu, Juxiu Haider, Fasih Ullah Ashraf, Hafiza Javaira Wang, Liande |
| author_role | author |
| collection | Repositorio Universidad Regional Amazónica |
| dc.creator.none.fl_str_mv | Ramos Aguila, Luis Carlos Sánchez Moreano, Jessica Paola Senyo Akutse, Komivi Bamisile, Bamisope Steve Liu, Juxiu Haider, Fasih Ullah Ashraf, Hafiza Javaira Wang, Liande |
| dc.date.none.fl_str_mv | 2022-12-06T16:22:53Z 2022-12-06T16:22:53Z 2023 |
| dc.format.none.fl_str_mv | application/pdf |
| dc.identifier.none.fl_str_mv | Ramos Aguila, L. C., Sánchez Moreano, J. P., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., Ashraf, H. J., & Wang, L. (2022). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International journal of biological macromolecules, S0141-8130(22)02712-X. Advance online publication. https://doi.org/10.1016/j.ijbiomac.2022.11.153 https://doi.org/10.1016/j.ijbiomac.2022.11.153 http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/623 |
| dc.language.none.fl_str_mv | en |
| dc.publisher.none.fl_str_mv | Scopus |
| dc.relation.none.fl_str_mv | PRODUCCIÓN CIENTÍFICA-ARTÍCULO CIENTÍFICO;A-IKIAM-000422 |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess |
| dc.source.none.fl_str_mv | reponame:Repositorio Universidad Regional Amazónica instname:Universidad Regional Amazónica instacron:IKIAM |
| dc.subject.none.fl_str_mv | Evolution Gene structure Growth promotion Plant endophyte interaction Cis-elements |
| dc.title.none.fl_str_mv | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| dc.type.none.fl_str_mv | info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
| description | Endophytic entomopathogenic species are known to systematically colonize host plants and form symbiotic associations that benefit the plants they live with. The actin-depolymerizing factors (ADFs) are a group of gene family that regulate growth, development, and defense-related functions in plants. Systematic studies of ADF family at the genome-wide level and their expression in response to endophytic colonization are essential to understand its functions but are currently lacking in this field. 14ADF genes were identified and characterized in the Citrus sinensis genome. The ADF genes of C. sinensis were classified into five groups according to the phylogenetic analysis of plant ADFs. Additionally, the cis-acting analysis revealed that these genes play essential role in plant growth/development, phytohormone, and biotic and abiotic responses; and the expression analysis showed that the symbiotic interactions generate a significant expression regulation level of ADF genes in leaves, stems and roots, compared to controls; thus enhancing seedlings' growth. Additionally, the 3D structures of the ADF domain were highly conserved during evolution. These results will be helpful for further functional validation of ADFs candidate genes and provide important insights into the vegetative growth, development and stress tolerance of C. sinensis in responses to endophytic colonization by B. bassiana. |
| eu_rights_str_mv | openAccess |
| format | article |
| id | IKIAM_743d327869fbd227a1070ea6509c28fa |
| identifier_str_mv | Ramos Aguila, L. C., Sánchez Moreano, J. P., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., Ashraf, H. J., & Wang, L. (2022). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International journal of biological macromolecules, S0141-8130(22)02712-X. Advance online publication. https://doi.org/10.1016/j.ijbiomac.2022.11.153 |
| instacron_str | IKIAM |
| institution | IKIAM |
| instname_str | Universidad Regional Amazónica |
| language_invalid_str_mv | en |
| network_acronym_str | IKIAM |
| network_name_str | Repositorio Universidad Regional Amazónica |
| oai_identifier_str | oai:repositorio.ikiam.edu.ec:RD_IKIAM/623 |
| publishDate | 2022 |
| publisher.none.fl_str_mv | Scopus |
| reponame_str | Repositorio Universidad Regional Amazónica |
| repository.mail.fl_str_mv | . |
| repository.name.fl_str_mv | Repositorio Universidad Regional Amazónica - Universidad Regional Amazónica |
| repository_id_str | 0 |
| spelling | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassianaRamos Aguila, Luis CarlosSánchez Moreano, Jessica PaolaSenyo Akutse, KomiviBamisile, Bamisope SteveLiu, JuxiuHaider, Fasih UllahAshraf, Hafiza JavairaWang, LiandeEvolutionGene structureGrowth promotionPlant endophyte interactionCis-elementsEndophytic entomopathogenic species are known to systematically colonize host plants and form symbiotic associations that benefit the plants they live with. The actin-depolymerizing factors (ADFs) are a group of gene family that regulate growth, development, and defense-related functions in plants. Systematic studies of ADF family at the genome-wide level and their expression in response to endophytic colonization are essential to understand its functions but are currently lacking in this field. 14ADF genes were identified and characterized in the Citrus sinensis genome. The ADF genes of C. sinensis were classified into five groups according to the phylogenetic analysis of plant ADFs. Additionally, the cis-acting analysis revealed that these genes play essential role in plant growth/development, phytohormone, and biotic and abiotic responses; and the expression analysis showed that the symbiotic interactions generate a significant expression regulation level of ADF genes in leaves, stems and roots, compared to controls; thus enhancing seedlings' growth. Additionally, the 3D structures of the ADF domain were highly conserved during evolution. These results will be helpful for further functional validation of ADFs candidate genes and provide important insights into the vegetative growth, development and stress tolerance of C. sinensis in responses to endophytic colonization by B. bassiana.Scopus2022-12-06T16:22:53Z2022-12-06T16:22:53Z2023info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfRamos Aguila, L. C., Sánchez Moreano, J. P., Akutse, K. S., Bamisile, B. S., Liu, J., Haider, F. U., Ashraf, H. J., & Wang, L. (2022). Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana. International journal of biological macromolecules, S0141-8130(22)02712-X. Advance online publication. https://doi.org/10.1016/j.ijbiomac.2022.11.153https://doi.org/10.1016/j.ijbiomac.2022.11.153http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/623enPRODUCCIÓN CIENTÍFICA-ARTÍCULO CIENTÍFICO;A-IKIAM-000422info:eu-repo/semantics/openAccessreponame:Repositorio Universidad Regional Amazónicainstname:Universidad Regional Amazónicainstacron:IKIAM2023-04-03T19:35:37Zoai:repositorio.ikiam.edu.ec:RD_IKIAM/623Institucionalhttps://repositorio.ikiam.edu.ec/Universidad públicahttps://www.ikiam.edu.ec/https://repositorio.ikiam.edu.ec/oaiEcuador...opendoar:02023-04-03T19:35:37falseInstitucionalhttps://repositorio.ikiam.edu.ec/Universidad públicahttps://www.ikiam.edu.ec/https://repositorio.ikiam.edu.ec/oai.Ecuador...opendoar:02023-04-03T19:35:37Repositorio Universidad Regional Amazónica - Universidad Regional Amazónicafalse |
| spellingShingle | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana Ramos Aguila, Luis Carlos Evolution Gene structure Growth promotion Plant endophyte interaction Cis-elements |
| status_str | publishedVersion |
| title | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| title_full | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| title_fullStr | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| title_full_unstemmed | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| title_short | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| title_sort | Comprehensive genome-wide identification and expression profiling of ADF gene family in Citrus sinensis, induced by endophytic colonization of Beauveria bassiana |
| topic | Evolution Gene structure Growth promotion Plant endophyte interaction Cis-elements |
| url | https://doi.org/10.1016/j.ijbiomac.2022.11.153 http://repositorio.ikiam.edu.ec/jspui/handle/RD_IKIAM/623 |